1. Download required files:
2. Install python 2.7.9
3. Add Environmental Variable:
My Computer -> Properties -> Advanced System Settings -> Environment Variables
Find the PATH variable and click Edit
Add ;C:\Python27 to the end of that string
4. Install ncbi-blast-2.7.1+-win64.exe
5. Install clustalw-2.1-win.msi to the repository folder
6. Go to the following directory:
cd C:\Shared\miPFinder
7. Run:
C:\Python27\python.exe C:/Shared/miPFinder/miPFinder_v1.py -f "C:/Shared/miPFinder/cow.1.protein.faa" -B "C:\Program Files\NCBI\blast-2.7.1+\bin\\" -H "C:\Shared\hmmer\\"